PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03536.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 275aa    MW: 31509.6 Da    PI: 8.489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03536.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.9e-191461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+llvd+++++G g+W++ +r  g+ R++k+c++rw +yl
  Rsa1.0_03536.1_g00002.1 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYL 61
                             79********************************************97 PP

2Myb_DNA-binding59.19.5e-1967111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T+eEdel+++++ ++G++ W++Ia +++ gRt++++k++w+++
  Rsa1.0_03536.1_g00002.1  67 RGNFTEEEDELIIKLHSLFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.153961IPR017930Myb domain
SuperFamilySSF466892.26E-3112108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-161461IPR001005SANT/Myb domain
CDDcd001672.67E-111661No hitNo description
PROSITE profilePS5129429.31562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2965116IPR009057Homeodomain-like
SMARTSM007172.6E-1866114IPR001005SANT/Myb domain
PfamPF002495.0E-1767111IPR001005SANT/Myb domain
CDDcd001679.78E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY  60
LRPDLKRGNF TEEEDELIIK LHSLFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPNTHRSIN GSATPPSKTT TPSLQNDEPV RFDFSGPDQQ RTVKPEPMVL DREEANNNIN  180
NCTSSGTTLE KDIRTDNDWV LNLELSVGPA TTKSYRYELT RKAHPDLAES TRRWGFELLG  240
AQSEMCLCCR IGSHNESCRN CRTSDILTTW ESKII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
1h8a_C2e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667360.0KC966736.1 Brassica napus MYB transcription factor 3 (MYB3.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302680.10.0transcription factor MYB3
RefseqXP_009103226.10.0PREDICTED: transcription factor MYB3-like
SwissprotQ9S9K91e-139MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A0A7BX130.0A0A0A7BX13_BRANA; MYB transcription factor 3
TrEMBLM4D7770.0M4D777_BRARP; Uncharacterized protein
STRINGBra012337.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-137myb domain protein 3